Ralf Gabriels
Postdoctoral researcher at @CompOmics.com in @VIBLifeSciences.bsky.social and Ghent University
Proteomics, Mass Spectrometry, Bioinformatics, Machine learning
- Reposted by Ralf GabrielsThis proteomics banger from @compomics.com and @ebi.embl.org folks looks great. It is one of those titles that makes some people really excited and others let out an audible groan (I’m in the former). pubs.acs.org/doi/full/10....
- Reposted by Ralf GabrielsGetting ready for a busy and exciting #HUPO2025 in Toronto! We’ll present on AI-driven peptide identification, tissue deconvolution, metaproteomics, and more. Join the #bioinformatics hub sessions on ProteoBench, mzPeak, and PSI-AI—community input welcome! #Proteomics #MassSpec 🧵 ½
- These events have always been the highlight of my academic year. Want to connect to the computational mass spec community in Europe and beyond in a highly positive and welcoming environment? Join this conference!
- Registration is now open for the EuBIC-MS Winter School 2026! Join us in Harrachov, Czechia for a week of keynotes, workshops, and networking on computational MS. Info and registration: eubic-ms.org/events/2026-... #EuBIC2026 #MassSpectrometry #MassSpec #Bioinformatics #Proteomics #Metabolomics
- I do realize that as one of the organizers, I might be somewhat biased here. But that being said, there's a good reason I joined the organizational team directly after my first EuBIC-MS event 😁
- Reposted by Ralf GabrielsMarie Locard-Paulet presenting the EuBIC-MS #ProteoBench project at the #EuPA2025 conference. 👉 Learn more about our open proteomics software benchmarking platform at proteobench.readthedocs.io. #Proteomics #Bioinformatics #Benchmarking
- Really liking @tineclaeys.bsky.social's metaphor on metadata: It's like the philosopher's stone, turning your experimental data into gold and giving it the elixir of life. Congrats with the EuPA Bioinformatics Award, Tine! #EuPA2025
- Reposted by Ralf GabrielsFrom PTMs to proteins, from metadata to metaproteomics. CompOmics has got you covered at #EuPA2025!
- Reposted by Ralf GabrielsAn older posts I meant to share, but @matrixscience.bsky.social had a really fun write-up on the significant benefits you get by mixing in a little @compomics.com to your workflow (MS2PIP via @ralf.gabriels.dev et al.). www.matrixscience.com/blog/using-m...
- MS2Rescore found its way into #ProteomeDiscoverer 🥳 At least, somewhat, through #MascotServer. Thanks for the implementation and for the nice blog post, @matrixscience.bsky.social! www.matrixscience.com/blog/using-m...
- Reposted by Ralf Gabriels🚀 New preprint alert! We've improved IM2Deep for accurate peptide collisional cross-section (CCS) prediction, even for peptides exhibiting multiple conformations in the gas phase! 🎯 Check it out here: www.biorxiv.org/content/10.1...
- Reposted by Ralf GabrielsSeems reasonable to dedicate my first Bluesky post to the following: Our latest research, TIMS²Rescore, is now published in Journal of Proteome Research! 🎉 Read it here: pubs.acs.org/doi/full/10.... A huge thanks to all our collaborators for making this happen!
- Reposted by Ralf GabrielsThe EUBIC-MS Developers Meeting 2025 in Brixen is off to a great start with keynotes by Pavel Sinitcyn, Katerina Nastou, and @willfondrie.com. #EuBIC2025
- Reposted by Ralf GabrielsDo you want to explore the PTMs you identified in your last MS experiment in a fun, interactive way? Try it out on our PTMVision web server at ptmvision-tuevis.cs.uni-tuebingen.de and check out the new publication in JPR at doi.org/10.1021/acs....!
- Reposted by Ralf Gabriels🚨 Big news, #TeamMassSpec! 🚨 How do we unlock proteomics data reuse, tackle metadata challenges, and harness public (clinical) data for AI? Find out at HUPO-PSI Spring Meeting 2025! 📅 March 31 – April 3, 2025 📍 Tübingen, Germany (1/4)
- Reposted by Ralf GabrielsThis new resource is AMAZING. You can easily search (re-search) your proteomics data in the context of human genomics (you know, that whole thing where we don't all have the exact same genome?) Read the paper, but instructions in the blog post - proteomicsnews.blogspot.com/2024/12/proh...
- Reposted by Ralf GabrielsRecently, We saw a discussion on the role of open-source in proteomics. Here, experienced developers & researchers maintaining OS tools for years shared this comment to guide newcomers in the field about OS and its role in the field. 💻 #Proteomics #OpenSource chemrxiv.org/engage/chemr...
- Reposted by Ralf GabrielsHi #TeamMassSpec! #FeMS+ has joined BlueSky! Please share and get the word out so we can build up a base here.
- Happy to announce MS²Rescore v3.0, our much-improved platform for #MachineLearning driven rescoring of #Proteomics search results. A big thanks to Louise Buur and Viktoria Dorfer for the great collaboration! Open access full text: biblio.ugent.be/publication/... Project: github.com/compomics/ms...
- Reposted by Ralf GabrielsThe state of vendor market share in bottom-up proteomics - a tale from published ProteomeXchange datasets. 1. Bruker has the greatest momentum with a 4-fold increase since 2017 - timsTOFs are largely responsible for this increase 2. Sciex is gradually losing market share
- Super happy to see MS²PIP spectrum predictions implemented on the ProteomeXchange USI lookup service! proteomecentral.proteomexchange.org/usi/?usi=mzs...
- Reposted by Ralf GabrielsHave you ever noticed how benchmarking #proteomics data analysis can be a wild west? EuBIC-MS community members did, and started #ProteoBench: An open platform for comparing proteomics data analysis workflows. Learn more at the webinar (27 Feb, 18h CET) Register here: bit.ly/3SfS4Lf
- Reposted by Ralf GabrielsI think it was Robbin Bouwmeester’s talk at EuBIC where it was SAGE to MS2Rescore and it seemed quietly bad ass. This update is making it look even more attractive as my new fav proteomics pipeline.
- Very surprised to see this published without any external FDR control testing...
- AttnPep: A Self-Attention-Based Deep Learning Method for Peptide Identification in Shotgun Proteomics pubs.acs.org/doi/10.... --- #proteomics #prot-paper
- Reposted by Ralf GabrielsAfter the educational day with hands-on tutorials, day 2 of the #EuBIC2024 Winter School started with great keynotes by Thomas Burger, Cecilia Lindskog, and @benneely.com.
- Reposted by Ralf GabrielsNot sure how much of EuBIC is actually on Bluesky, but @magnuspalmblad.bsky.social has a feed for the conference to capture the hashtag. Get it!
- Reposted by Ralf GabrielsOnly four more days for early bird registration for the #EuBIC2024 Winter School ⏲️ Registration info on eubic-ms.org/events/2024-...
- Reposted by Ralf GabrielsOnly four more days for early bird registration to a proteomic bioinformatics partay in Winterberg!
