Radoslav Krivak
🧬 Structural Bioinformatics | 💊 AI/ML for Drug Discovery | Geometric DL
🔬 @iocbprague.bsky.social, prev. PhD @cusbg.bsky.social @mff.unikarlova.cuni.cz
- Reposted by Radoslav KrivakVery happy @roman-bushuiev.bsky.social and I joined the amazing team led by @hannes-stark.bsky.social to work on BoltzGen, a generative model for binder design based on Boltz-2. Excited what it will enable!
- Reposted by Radoslav KrivakWe train machine learning models on millions of proteins. But when it comes to making predictions, do we need them to understand all proteins at once? Often, we need an accurate model for the specific protein we are studying or designing. We address this with ProteinTTT arxiv.org/abs/2411.02109 1/🧵
- Finally, Mol* with a human face
- Reposted by Radoslav Krivaktoday #3Dprint protein is ferritin (PDB: 6I36) available here: www.printables.com/model/141627...
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- There is a new version of Runs N' Poses preprint by @peterskrinjar.bsky.social and @ninjani.bsky.social comparing Boltz-2 to Boltz-1 and to other co-folding methods by extension (though not yet to classical docking). @mdc-biocat.bsky.social - how did comparison of Boltz-2 to PocketVina turn out?
- Reposted by Radoslav KrivakYouTube link for MLCB2025 is up! Starting in 30 min. www.youtube.com/live/19I7xTh...
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- Reposted by Radoslav KrivakExciting to see our protein binder design pipeline BindCraft published in its final form in @Nature ! This has been an amazing collaborative effort with Lennart, Christian, @sokrypton.org, Bruno and many other amazing lab members and collaborators. www.nature.com/articles/s41...
- 😂
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- Reposted by Radoslav KrivakNew Practical Cheminformatics Post patwalters.github.io/Three-Papers...
- Reposted by Radoslav KrivakMy god these guys are such spectacular morons gizmodo.com/billionaires...
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- Reposted by Radoslav KrivakWe have written up a tutorial on how to run BindCraft, how to prepare your input PDB, how to select hotspots, and various other tips and tricks to get the most out of binder design! github.com/martinpacesa...
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- 🚀 GPU-accelerated docking to P2Rank-predicted pockets
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- Claude Code
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- 🚀 Our paper on the updated PrankWeb, a web app for protein binding site prediction using P2Rank, is out in @narjournal.bsky.social. Now with docking integration! 👨💻 Try it: prankweb.cz 📄 Paper: doi.org/10.1093/nar/... 💻 GitHub: github.com/cusbg/prankweb Developed at @cusbg.bsky.social
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- Happy world homeopathy day
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- 🧪🇨🇿 A reminder: there’s a starter pack with Czech science institutions and research labs. A bunch of new ones have joined Bluesky lately -- and some, like Charles University (@charlesuni.cuni.cz), have fully made the move here from the other place.
- To clear up any confusion, there are 2 starter packs: 1. For scientists 👩🔬: bsky.app/starter-pack... 2. For institutions 🏛️: bsky.app/profile/cusb...at://did:plc:mzcuuh7isxyc6mx62p3mat5g/app.bsky.graph.starterpack/3lbd22kiszl27
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- Charles University is oficially leaving X and moving to Bluesky
- Reposted by Radoslav Krivak“Bluesky has won”. Please retweet… 😉
- THREAD The numbers are in. @bsky.app research sharing volumes vs X Formerly Twitter In March 2024, on most days, Bluesky hosts more posts linked to research published in 2025 than X. By quite a lot. Release the Kraken... #AcademicSky #HigherEd #Altmetrics 1/11
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