Karel "CaCO3" Berka
theoretical physical chemist, molecular modeller and chem- and bioinformatician - #AlphaFoldology enthusiast
Palacky University Olomouc, ORCID:0000-0001-9472-2589 #boardgamegeek (tweets my own) #ELIXIRCZ
- Reposted by Karel "CaCO3" BerkaWe're hiring a 𝐓𝐫𝐚𝐢𝐧𝐢𝐧𝐠 𝐒𝐩𝐞𝐜𝐢𝐚𝐥𝐢𝐬𝐭 for 𝐀𝐥𝐩𝐡𝐚𝐅𝐨𝐥𝐝 𝐃𝐚𝐭𝐚𝐛𝐚𝐬𝐞 (AFDB)! Join our team to develop training content, create workshops, and drive global engagement with AlphaFold and AFDB. Full-time, hybrid role. Apply now! embl.wd103.myworkdayjobs.com/en-US/EMBL/d... #AFDB #Jobs #emblebi
- Our 9th Advanced in silico Drug Design workshop just started - you can watch #9ADD at www.youtube.com/playlist?lis... All materials will be available 9ADD workshop webpage> www.kfc.upol.cz/9add together with program #compchemsky #chemsky #medchemsky 💊🧬🖥️
- Reposted by Karel "CaCO3" BerkaFor this weekend only and only pushing on bluesky :)...get both chemscrapess book (PDF download) at 25% off when purchased together. #chemchat #chemsky
- Reposted by Karel "CaCO3" BerkaIf you develop software for research, consider responding to this survey trying to help understand who develops research software and how they work so as to get more robust support: softwaresaved.limequery.com/611257?lang=en #chemSky
- Reposted by Karel "CaCO3" BerkaAn observation test for your inner 8-year-old. You’ll be doing well to spot 12 deliberate mistakes. From Treasure magazine, 1963 Official answers coming soon (Even if you don’t reply, could you please ‘like’ or share this one?)
- Reposted by Karel "CaCO3" BerkaSince Jan 1 2025, which feels like four trillion years ago, research has been shared on here 5 million whole-ass times. Bluesky recently passed 2 billion posts IN TOTAL. So 0.25% of the entire site's traffic was citations to research. That is actually massively high. Is it? Yes. Here's why.
- I am thinking about making several protein structure puzzle for computational proteomics course of @eubic-ms.org - which structures would you suggest and why?
- Molecular PF 2026
- BTW: Transition energy is 118.43 kcal/mol in vacuo with OMol25's eSEN Conserving Small model. Not that much - those Christmas cookie eating should do the job... :) #theochem #compchem #chemsky ⚛️🧪 #RareEvent #EnhancedSampling #PathSampling #PhysChem #chemchat #Chemistry #ChemBio #EdTech
- Reposted by Karel "CaCO3" Berka[Not loaded yet]
- cool tuning of protein language models to individual families with ProteinTTT #Alphafoldology
- Tessera iacta est. #volby2025
- What would you use to setup and run a small MD simulations? no HPC, just for teaching and few small systems for thinking on structures? maybe to test some small reactions… #CompChemSky
- K dnešnímu vystoupení ve Studiu 6 na @ceskatelevize.cz jsem si přichystal #3Dprint pomůcku - model bakteriofága phiX174, jenž posloužil @arcinstitute.org k přípravě nových bakteriofágů proti rezistentním kmenům E. coli
- today #3Dprint protein is ferritin (PDB: 6I36) available here: www.printables.com/model/141627...
- Reposted by Karel "CaCO3" Berka🧬🧶
- ChimeraX daily builds can predict binding affinity of small molecules using Boltz 2 on your Mac, Windows or Linux computer. www.rbvi.ucsf.edu/chimerax/dat...
- +1 This paper is based on our experience on how Czech research teams offered their bioinformatics expertise to public health needs and coordinate within COG-CZ inofficial consortia. We started without funding and in biweekly reports monitored the COVID pandemics. pubmed.ncbi.nlm.nih.gov/40467653/
