Nuno Pimpão Martins
- Reposted by Nuno Pimpão Martins🚨 Alarm!!! 🚨 AI/ML course for microscopy image analysis!!! 🧐 In 2026 at Janelia (@hhmijanelia.bsky.social), no tuition, housing and meals provided! Isn’t that borderline unbelievable?!? 20 students, ~14 TAs and lecturers 🗓️ June 4-18 2026 ✍️ Jan 15 2026 ✍️ 🔁 pls!! www.janelia.org/you-janelia/...
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- Reposted by Nuno Pimpão MartinsApplications for the next @royalmicrosoc.bsky.social “Introduction to image analysis” workshop are now open! Join us for 3 days in Cardiff in May to learn the foundations of #bioimageanalysis using Fiji, Python and @napari.org www.rms.org.uk/rms-event-ca...
- Reposted by Nuno Pimpão MartinsWe just released a new major version of TrackMate (v8), the cell and organelle tracking plugin of Fiji. It ships many new features, detailed below, but that are articulated around the following:
- Reposted by Nuno Pimpão Martins🦠🔬🤖🧑💻 #mAIcrobe is out! With @pinholab.bsky.social's lab, we launched an open-source framework for high-throughput bacterial image analysis. By rockstars A. Brito & B. Saraiva et al, making #DeepLearning for phenotyping accessible! Easy to use, plus model training 📜 www.biorxiv.org/content/10.1...
- Reposted by Nuno Pimpão MartinsCool collaborations on light sheet microscopy @huiskenlab.bsky.social, cellular barcoding @mgrillo.bsky.social, AI-based cell tracking @jytinevez.bsky.social, and citizen science through video game for cell tracking @rebelpixel.fr see www.averof-lab.org/pages/tracman 3/3
- Reposted by Nuno Pimpão MartinsHere it is! Postdoctoral position to identify the progenitors sensory organs in the regenerating legs of Parhyale apply here: www.averof-lab.org/pages/tracman 1/3
- We've just been awarded a grant to study the cellular basis of regeneration – to track the progenitors of sensory organs in the context of leg regeneration, in our favourite crustacean tinyurl.com/parhyale, based on live imaging and cell tracking. The project involves some cool collaborations... 1/3
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- Reposted by Nuno Pimpão MartinsBioImage analysis friends - King's are recruiting for a full-time, permanent facility position! Come and work with fun microscopes and fun people (and me!) - please share! www.kcl.ac.uk/jobs/126345-...
- Reposted by Nuno Pimpão MartinsFlyBase needs your help! We ask that European labs continue to contribute to Cambridge, UK FlyBase, whereas US and other non-European labs can contribute to US FlyBase. For more information and how to donate: wiki.flybase.org/wiki/FlyBase...
- Reposted by Nuno Pimpão MartinsOur beautiful Hydra made the cover!!! 😍😍😍 An experiment performed by Pavel Mejstrik with a HCR protocol by @giuliaserafini.bsky.social, @paveltomancak.bsky.social lab @mpi-cbg.de Actin fibers in blue, nuclei in orange.
- Reposted by Nuno Pimpão MartinsI just got the notice that all the FlyBase people at Harvard, including me, will be laid off on October 12. I'm devastated.
- Reposted by Nuno Pimpão Martins
- 🚨 Deadline extended! You now have until August 8 to apply for the Light-Sheet Image Analysis Workshop (Jan 5–9, 2026) at Universidad Mayor in Santiago de Chile with the support of CZI @cziscience.bsky.social and @lisium-chile.bsky.social 1/3
- Reposted by Nuno Pimpão Martins🚨 Deadline extended! You now have until August 8 to apply for the Light-Sheet Image Analysis Workshop (Jan 5–9, 2026) at Universidad Mayor in Santiago de Chile with the support of CZI @cziscience.bsky.social and @lisium-chile.bsky.social 1/3
- Reposted by Nuno Pimpão MartinsThe 2nd AI4Life Challenge is live! Calling the AI & bioimaging community to tackle a key microscopy challenge: removing noise while preserving detail. 📦 Paired noisy/clean datasets 📈 Ground-truth evaluation 🧠 DL focus Build, test, compete 👉 ai4life.eurobioimaging.eu/challenge-2/
- Reposted by Nuno Pimpão Martins3rd challenge from AI4Life! We're inviting the community to design unsupervised models that preserve spatial & temporal patterns in neuronal data. 📅 Open till Aug 11, 2025 🚀 Join now: ai4life.eurobioimaging.eu/challenge-3/
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- Reposted by Nuno Pimpão MartinsIt's here! ✨ The #ExSRRF protocol paper is out 😍. Full details for merging Expansion Microscopy with our eSRRF analysis. From cells to tissue. A partnership with @puellesv.bsky.social's lab. Lead by Dominik Kylies and @hannah-superres.bsky.social + colleagues. #ExM #eSRRF ➡️ Open link: rdcu.be/euvEw
- Reposted by Nuno Pimpão Martins🔬👨💻📰 #SReD is out! Automated structural detection for #ImageJ & #FIJI, from nano to macro ✨🐘. No training data, no bias - texture analysis with GPU acceleration!⚡️ Brainchild of @afonsomendes92.bsky.social and adventure w @christlet.bsky.social lab + friends. Check: www.nature.com/articles/s41...
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- Reposted by Nuno Pimpão Martins🧑🔬📰🚀 #RxivMaker is here! A framework automating the creation of publication-ready scientific #preprints from simple Markdown. Goodbye manual formatting, and hello gorgeous manuscripts! A great adventure with @guijacquemet.bsky.social's lab 📜: zenodo.org/records/1575... 👨💻: github.com/HenriquesLab...
- Reposted by Nuno Pimpão MartinsJoin us for the next #DGZ Focus Workshop on a topic you MUST be interested in: #Imaging in Cell Biology, organized by @pfeffercryolab.bsky.social and @ewerslab.bsky.social - Tuesday, June 24, noon, Zoom 🔬👀✨
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- Reposted by Nuno Pimpão Martins🚨 📣 Registration for #CBIAS2025 is now open! 24-25th November at the Wellcome Collection, special early bird registration rate until 20th July www.crick.ac.uk/whats-on/cri...
- Reposted by Nuno Pimpão MartinsCurious about aging & longevity research? Join us at GIMM Fest (Lisbon, Portugal) Discover groundbreaking insights & engage with top researchers. It's a celebration of curiosity & a catalyst for change. 🗓️ Sept 4-5: Scientific Sessions + Sept 6: Public Event 👉 gimm.pt/gimm-festival/
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- Reposted by Nuno Pimpão MartinsBig step for open science! 🎉 Our @eu-openscreen.bsky.social consortium drops their first open Cell Painting dataset. Wolff et al. 2025: doi.org/10.1016/j.is... FAIR, high-quality & ready to power AI in drug discovery. 100K+ compounds coming in 2025! #OpenData #CellPainting #DrugDiscovery
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- Reposted by Nuno Pimpão MartinsThe YMIA would like to invite everyone interested in microscopy and image analysis to our weekly watch-parties. This Tuesday we cover how to choose the right microscope for your experiment as well as learning how to minimize damage to samples during light microscopy.
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- Reposted by Nuno Pimpão MartinsYes, that is me, for those who did not yet know. This was not planned but I am very happy to go 'home' even though I will miss a lot about Portugal. If you still want to visit, hurry, otherwise see you in Cambridge. If you want to know more contact me directly. www.pdn.cam.ac.uk/news/dr-care...
- Does anyone know of a nice web viewer for biological image data that is preferably open source or something close to it? Asking for a friend 👀
- Reposted by Nuno Pimpão MartinsIf you missed the deadline, don't panic! Registration has been extended until 19th of May for the coolest course of the year! Sign up!
- Registrations are open for the EMBO Practical course on light sheet microscopy! Great opportunity to learn all kinds of light-sheet, as well as image postprocessing from the experts themselves. meetings.embo.org/event/25-lsm
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- Reposted by Nuno Pimpão Martins🚨🔬💗Whether investigating cell organelles or mapping proteins, together with Victor Puelles's lab we lay a roadmap for selecting optimal #ExM and #SuperResolution #microscopy combinations. Daria Aristova and Dominik Kylies review with amazing co-authors pubs.aip.org/aip/apr/arti...
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- Reposted by Nuno Pimpão MartinsWe’re hiring: GIMM is launching its first call for Group Leaders. Looking for scientists ready to push boundaries, ask bold questions & build the future of biomedical discovery. 🔗 gimm.pt/jobs/open-ca... 📅 Apply by June 8 #ScienceJobs #GroupLeader #BiomedicalResearch
- Reposted by Nuno Pimpão MartinsBioimaging and bioimage analysis friends, some help if you have 2-3 mins; for a paper, we're trying to estimate the number of biologists trained in open source software or tools in the last ~5 years. (1/2) #bioimaging #microscopy #bioimageanalysis
- Reposted by Nuno Pimpão MartinsGloBIAS #BioimageAnalysis #Conference 2025 – we have opened the registration for our 2025 in-person event. Please check the webpage www.globias.org/activities/b... for more information and the link to the registration form.
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- Reposted by Nuno Pimpão MartinsAfter a long journey, Segment Anything for Microscopy is now published in Nature Methods! We significantly improve SAM for interactive and automatic segmentation in light and electron microscopy and build a user-friendly tool. www.nature.com/articles/s41...
- Reposted by Nuno Pimpão MartinsYay! Mariana Ferreira submitted!🙌🥳 ⚖️📐📸📊🔬
- Reposted by Nuno Pimpão MartinsHow can organs regenerate fast? Bioelectricity helps -- by coupling sub-second electrical injury signals to regenerative proliferation. First preprint from my potsdoc :D with @liujinghui.bsky.social @ritamateus.bsky.social @mpi-cbg.de and collaborators @mpipks.bsky.social @csbdresden.bsky.social
- Injury-induced electrochemical coupling triggers regenerative cell proliferation biorxiv.org/content/10.1101/202…
- Reposted by Nuno Pimpão MartinsFlyBase made a fly gene themed crossword puzzle for #Dros25. If you missed getting one (we have lots at the FlyBase booth), or you couldn’t be here, it’s also available online. puzzleme.amuselabs.com/pmm/crosswor...
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- Reposted by Nuno Pimpão MartinsThe registration close Tuesday next week! research.pasteur.fr/en/course/ne...
- Reposted by Nuno Pimpão MartinsRegistrations are open for the EMBO Practical course on light sheet microscopy! Great opportunity to learn all kinds of light-sheet, as well as image postprocessing from the experts themselves. meetings.embo.org/event/25-lsm
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