Marco Varrone
Postdoc in Computational Biology at @CirielloLab @dbc_unil.
Machine Learning for spatial omics.
https://batcheffect.com
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- I collected all of what I could find about the upcoming Illumina Spatial Transcriptomics technology, with some predictions about costs and sensitivity compared to 10x Genomics Visium HD www.batcheffect.com/p/the-giant-...
- A few weeks ago, we released CellCharter v0.3.5. Among some bug fixes, we received our first contribution from an external contributor: @loggas.bsky.social ! He designed a new metric called Relative Component Size (RCS).
- Reposted by Marco VarroneAfter 6 (healthy) months of hiatus from social media, first post with a brand new conference announcement!! 🔥COMPUTATIONAL BIOLOGY IS EVERYWHERE! Join us in Lausanne for the first international Computational Biology Symposium! 18-19 September 2025 Registrations are OPEN! cbiosymposium.unil.ch
- Last year I completed my PhD and my father recorded my public defense 📹 So I decided to share it! I talked about the communities of cells in our bodies and how we develop algorithms to study them. Hope you enjoy it!
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- The scverse ecosystem is one of the best things that could have ever happened to the single-cell and spatial fields. Smoother computational analyses mean faster and better research
- Contributing to this project has been very cool! Quick tip for anyone interested in cell segmentation: I started with StarDist but it failed to detect nuclei in samples with regions of very different cell density. Switched to DeepCell Mesmer and it worked like a charm!
- Just before the holidays, here is the latest from the Oricchio lab. In collaboration with the hemato-oncology team, we established a new model to test therapies on lymphoma patient samples by preserving the tissue composition and architecture of the original tumors. www.nature.com/articles/s41...
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