Erik Garrison
computational biologist: genomes, evolution, DNA
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- Postdoc position opening in my group! Research projects: pangenomes for diverse organisms, genome evolution, biocomputing, language models. Please reach out if interested!
- We've had a wonderful series of pangenome meetings in Memphis. Join us for the next edition in May!
- Memory makes computation universal, remember? thinks.lol/2025/01/what...
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- Speech to text is the most efficient way to communicate, but you have to learn how to do it, just like you learn how to touch type or tap on your phone. And it's not just writing, but reading that we have to learn how to do, because we're not used to reading speech-to-text transcriptions.
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- @timtriche.bsky.social so this really is a public forum. No DMs. Fun
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- We are already using this at scale to build an all-to-all homology map for the vegetate genomes project 290 genome set! It let us find similarities at down to 70% ANI in "only" ~200k CPU hours. Was totally impossible with minimizer mashmap
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