Tristan Bepler: We provide pre-trained networks for microtubule and membrane semantic segmenation and instance segmentation of general surface and linear-like structures.

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Tristan Bepler tbepler.bsky.social · Dec 21, 2024
A flexible framework for fast and accurate segmentation of filaments and membranes in tomograms and micrographs - the TARDIS manuscript is now live @biorxivpreprint.bsky.social ! Thanks to hard work by Robert Kiewisz and our many collaborators! www.biorxiv.org/content/10.1...
Accurate and fast segmentation of filaments and membranes in micrographs and tomograms with TARDIS

It is now possible to generate large volumes of high-quality images of biomolecules at near-atomic resolution and in near-native states using cryogenic electron microscopy/electron tomography (Cryo-EM...

biorxiv.org

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Tristan Bepler tbepler.bsky.social
We provide pre-trained networks for microtubule and membrane semantic segmenation and instance segmentation of general surface and linear-like structures.
Dec 21, 2024 16:00
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Tristan Bepler tbepler.bsky.social · Dec 21, 2024
As a flexible framework, new semantic segmenation networks can be plugged in for new biomolecules and imaging modalities, which we show in application to actin and TIRF microscopy.

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Tristan Bepler tbepler.bsky.social · Dec 21, 2024
We applied TARDIS to annotate about 13,000 tomograms in the CZII data portal @chanzuckerberg.bsky.social cryoetdataportal.czscience.com
CryoET Data Portal

cryoetdataportal.czscience.com

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Tristan Bepler tbepler.bsky.social · Dec 21, 2024
TARDIS is open source on github (github.com/SMLC-NYSBC/T...) and can also be installed via pip
GitHub - SMLC-NYSBC/TARDIS: Transformer And Rapid Dimensionless Instance Segmentation

Transformer And Rapid Dimensionless Instance Segmentation - SMLC-NYSBC/TARDIS

github.com

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