Jan-Matthis Lueckmann
Research scientist at Google in Zurich
research.google/teams/connectomics
PhD from @mackelab.bsky.social
- We'll present our #ICLR2025 spotlight on ZAPBench this afternoon: 📍 Hall 3 #61!
- ⚡️ Excited to introduce ZAPBench, our #ICLR2025 spotlight: The Zebrafish Activity Prediction Benchmark measures progress in predicting neural activity within an entire vertebrate brain (70k+ neurons!) Explore interactive visualizations, datasets, code + paper: google-research.github.io/zapbench 🧠🧪
- ⚡️ Excited to introduce ZAPBench, our #ICLR2025 spotlight: The Zebrafish Activity Prediction Benchmark measures progress in predicting neural activity within an entire vertebrate brain (70k+ neurons!) Explore interactive visualizations, datasets, code + paper: google-research.github.io/zapbench 🧠🧪
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View full threadFantastic collaboration between Google Research, HHMI Janelia, and Harvard -- including @michalwj.bsky.social @stardazed0.bsky.social @aleximmer.bsky.social @mishaahrens.bsky.social and many more! Paper: openreview.net/pdf?id=oCHsD... Website: google-research.github.io/zapbench
- + special shout-out to @alexbchen.bsky.social who recorded the activity dataset!
- 🧪 We test a number of SOTA time-series forecasting models to provide baselines. We also explore forecasting activity directly in voxel space in a companion paper (www.arxiv.org/abs/2503.00073).
- 🕸️ Last but not least -- the connectome for this specific 🐟 specimen is currently being reconstructed and will be available at a later date!
- 🔬 We collected and extensively processed a 4d dataset imaged with a lightsheet microscope. The resulting 3d movie covers over 70,000 neurons of a fish exposed to various visual stimuli.
- 📈 This dataset forms the core of the Zebrafish Activity Prediction Benchmark (ZAPBench), which uniquely measures progress on forecasting neural activity at full brain scale and single cell resolution in a vertebrate.
- 🧠 How accurately can future neural activity be predicted from past activity at the scale of the whole brain? Larval zebrafish offer a unique opportunity to address this question, as they are currently the only vertebrate species in which whole-brain activity can be recorded at cellular resolution.
