Dagmar Iber & CoBi
Computational Biology @ETH: data-driven modeling & simulation of emerging phenomena in development & disease bsse.ethz.ch/cobi youtube.com/@cobi-ethz
- Reposted by Dagmar Iber & CoBi"Within the competition to bring this field to a new level, SimuCell3D is remarkable and will mark a clear evolution of the topic." 🥁That’s what the committee said about this #SIBRemarkableOutputs 2024 👉Discover the output: tinyurl.com/53arz2rz @iberd.bsky.social
- Out now: Simulating Organogenesis in #COMSOL: Tissue Patterning with Directed Cell Migration We provide a detailed walkthrough of how to implement #DCM partial integro-differential equation models - enabling accessible simulations of tissue patterning and morphogenesis. arxiv.org/pdf/2509.08930
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- Our paper "Morphogen gradients can convey position and time in growing tissues" is now out in Newton @cp-newton.bsky.social Quite fitting to see this novel idea that morphogen gradients not only encode position, but can also time & synchronise development over long distances out in a new journal.
- How can cells self-organize rapidly into complex patterns during development? Let’s explore a powerful and underappreciated mechanism: Directed Cell Migration (DCM). Preprint @biorxivpreprint.bsky.social : doi.org/10.1101/2025... 👇Thread 🧵(1/11)
- During embryonic development, cellular tissues transition from uniform starting conditions into robust spatial patterns. #DCM offers a particularly fast and versatile route to spontaneously symmetry breaks and pattern formation without tissue buckling. 🧵(2/11)
- Let me add our paper to this review of mechanical drivers of NT folding. We showed that mammalian spinal #neuraltube folding is primarily driven by #mesoderm expansion and #zippering. #Hingepoints emerge as a result of these extrinsic forces. www.pnas.org/doi/10.1073/... x.com/DagmarIber/s...
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- Are you a C++ expert and interested in making 3D cell-based tissue simulations with #SimuCell3D ever more powerful? Please apply and join us as #Master student, #PhD student or #Post-Doc!! jobs.ethz.ch/job/view/JOP... jobs.ethz.ch/job/view/JOP... x.com/DagmarIber/s...
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- 🚀 Introducing #PINNverse — a game-changer for parameter estimation in differential equations! 🧠💡 No forward solves. Better accuracy. Robust to noise. Preprint: doi.org/10.48550/arX... #SciComm #MachineLearning #InverseProblems #PINNs
- What a beautiful cover for our #mechanobiology paper "Morphometry and mechanical instability at the onset of epithelial bladder cancer": doi.org/10.1038/s415... - thx @naturephysics.bsky.social !! News & Views "Tissue wrinkles foreshadow cancer" doi.org/10.1038/s415...
- Reposted by Dagmar Iber & CoBi🚨 We are thrilled to announce our amazing list of keynote speakers!! @PCusachs @GeorgHalder @hirashima0203.bsky.social @iberd.bsky.social @johannaivaska.bsky.social @gijsjekoenderink.bsky.social @laurentnguyen.com @renkawitzteam.bsky.social @Sixt_Lab ...
