Hannah Dickmänken
My favorite ice cream flavors are science & feminism. PhD candidate at VIB.AI in Stein Aerts lab 🪰 - she/her
- Reposted by Hannah DickmänkenWe are thrilled to share our new pre-print: “System-wide extraction of cis-regulatory rules from sequence-to-function models in human neural development”. S2F-deeplearning models can accurately encode enhancers, yet decoding these models into human-interpretable rules remains a major challenge.
- Paper alert! 💻 How many cells do you need to train reliable deep learning models in regulatory genomics? We asked how data quality, sequencing depth, and dataset size affect training of sequence-to-function models from scATAC-seq. Out now www.nature.com/articles/s41... (details below)
- Huge thanks to @steinaerts.bsky.social @s-poovathingal.bsky.social, Marta Wojno & @lukasmahieu.bsky.social for the support! @vibai.bsky.social & @vibneuroleuven.bsky.social
- Reposted by Hannah Dickmänken🚀 Proudly introducing the VIB-KU Leuven Center For Neuroscience, a merger of the two former VIB research centers VIB-KU Leuven Center for Brain & Disease Research and Neuro-Electronics Research Flanders (NERF)! Our new motto: Bold Science, Real Impact. www.youtube.com/watch?v=uhaq...
- Reposted by Hannah DickmänkenHappy to share the Biodiversity Cell Atlas white paper, out today in @nature.com. We look at the possibilities, challenges, and potential impacts of molecularly mapping cells across the tree of life. www.nature.com/articles/s41...
- Reposted by Hannah DickmänkenThe FlyBase situation has made the national news www.nbcnews.com/science/scie...
- Reposted by Hannah Dickmänken1/ First preprint from @jdemeul.bsky.social lab 🥳! We present our new multi-modal single-cell long-read method SPLONGGET (Single-cell Profiling of LONG-read Genome, Epigenome, and Transcriptome)! www.biorxiv.org/content/10.1...
- Reposted by Hannah DickmänkenVery proud of two new preprints from the lab: 1) CREsted: to train sequence-to-function deep learning models on scATAC-seq atlases, and use them to decipher enhancer logic and design synthetic enhancers. This has been a wonderful lab-wide collaborative effort. www.biorxiv.org/content/10.1...
