Felix Wiegand
👨💻 PhD @ Bioinformatics & Computational Oncology, UDE
🧬 Rust, data & science
🎵 Music tech & sonic tinkering
🔗 github.com/fxwiegand
- Reposted by Felix Wiegand[Not loaded yet]
- Reposted by Felix Wiegand[Not loaded yet]
- 🚀 Our new paper on Alignoth just published in Bioinformatics! Alignoth generates self-contained interactive HTML read alignment plots from BAM files – Rust-based, portable, and ideal for headless workflows. 📄 doi.org/10.1093/bioi... #bioinformatics #genomics #rust @johanneskoester.bsky.social
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- The official Datavzrd documentation now includes an AI (trained on docs, code and our paper) to answer all your questions: datavzrd.github.io/docs/index.h... Huge thanks to @gurubase.bsky.social for supporting Open-Source software and making this possible! @johanneskoester.bsky.social
- We’ve added a new Snakemake meta-wrapper for creating standalone variant reports: 🔗 snakemake-wrappers.readthedocs.io/en/stable/me... It combines Datavzrd for an interactive overview table with Alignoth for read pileup plots — all linked together in one portable HTML report.
- Super happy to announce a major update of our portable and interactive alignment viewer #alignoth written in #rust. The new version provides improved highlighting of specific genomic sites or regions via VCF or BED inputs and also updates the coverage plot with variants! @johanneskoester.bsky.social
- Reposted by Felix WiegandOur tool #vembrane has a new homepage, providing a high level summary of all the things you can do with it to transform VCF/BCF files via simple Python expressions: vembrane.github.io Filter, tag, annotate, sort, and flexibly convert to CSV/TSV, JSON, JSONL, YAML and FHIR via a unified syntax.
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- Happy to share our invited article “Komplexe Tabellen verständlich machen” just published in BIOspektrum: doi.org/10.1007/s122... about our tool #datavzrd @johanneskoester.bsky.social ⚠️ Disclaimer: The article is in German.
- Reposted by Felix Wiegand🧬 & 🖥️ ✨ Secure your ticket for the German Conference on #Bioinformatics (#GCB2025)! We are excited to welcome you to Düsseldorf starting September 22, 2025. 👉Register now and be part of #GCB2025: gcb2025.de/GCB2025_regi...
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- Our paper on Datavzrd has been published in @plosone.org! 🥳 Datavzrd is a new tool written in Rust for creating interactive, shareable HTML reports from tabular data — no server needed. Check it out here: 🔗 journals.plos.org/plosone/arti... @johanneskoester.bsky.social
- Reposted by Felix Wiegand[Not loaded yet]
- Reposted by Felix Wiegand[Not loaded yet]
- Another major new #alignoth release is now available on #bioconda ⭐ Our read alignment plots now include a coverage plot on top as well as improved visualization of overlapping read pairs! Check out our interactive demo at alignoth.github.io/preview.html @johanneskoester.bsky.social
- @johanneskoester.bsky.social and I just released alignoth v0.15.0! 🎉 Now with a brand-new interactive mode: just run alignoth and follow the prompts—no CLI arguments needed. github.com/alignoth/ali...
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- 🚀 We just released Alignoth v0.14.0! The HTML view now comes with a control panel, read filtering, multi-selection via shift-click, and a more interactive read info table. Check it out: github.com/alignoth/ali... #bioinformatics #rust #genomics #vegalite
- Reposted by Felix Wiegand[Not loaded yet]
- Reposted by Felix Wiegand[Not loaded yet]
- Excited to share that our preprint, Datavzrd: Rapid programming- and maintenance-free interactive visualization and communication of tabular data, is now up on bioRxiv! 🎉 #datavzrd
- Reposted by Felix Wiegand[Not loaded yet]
- Reposted by Felix Wiegand[Not loaded yet]
- The latest #datavzrd version introduces a new pills option to visualize multiple values in a single table cell, with each ordinal value represented by a distinct color. @johanneskoester.bsky.social datavzrd.github.io
