Slim 5 can now simulate genomes with multiple chromosomes like autosomes, sex chromosomes, mitochondria and chloroplast dna
academic.oup.com/mbe/article/...
SLiM 5: Eco-evolutionary Simulations Across Multiple Chromosomes and Full Genomes
Abstract. Evolutionary simulations of multiple chromosomes, even up to the scale of full-genome simulations, are becoming increasingly important in populat