CCP-volumeEM
A community for computational practitioners working in volume electron microscopy (vEM)
Join our mailing list at bit.ly/ccp-volume-em
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- Reposted by CCP-volumeEM👀Looking to connect with the CAKE community?👀 Jump into our Slack workspace and mailing list to exchange ideas and collaborate. 👉 www.cake.ac.uk/involved/ #KnowledgeExchange #DRI
- Reposted by CCP-volumeEMOur Method of the Year 2025 is...drumroll please...EM-based connectomics!! Our Editorial introduces our choice and highlights six Comments and other related content in this special issue. Please join us in celebrating EM-based connectomics! 🎉🧠🔬 www.nature.com/articles/s41...
- Reposted by CCP-volumeEMConnectomics is Method of the Year 2025!! @natmethods.nature.com just released the news nature.com/articles/s41... In my perspective piece, I afford some predictions into the future and compare how we are doing vs. genomics www.nature.com/articles/s41...
- Let's see how many computational volume EM talks we can get on the programme! Abstract submission deadline Friday March 6th 2026 #BioImageAnalysis #vem #volumeem
- 📣 Abstract submissions for talks and poster presentations are officially *OPEN* for the 21st International Microscopy Congress (IMC21) 💥 🔬 🙌 Join our impressive line-up of speakers at this great event for the #microscopy community. Abstract submissions: ow.ly/chvR50XvFxC
- Reposted by CCP-volumeEMBig news! Our week-long #bioimageanalysis bootcamp is BACK! Learn how to think about bioimage analysis like the pros do, learn what corrections you should (and shouldn't!) apply to your images, learn open source tools, and more. Apply NOW at broad.io/BAB3 for our January 2026 course!
- Reposted by CCP-volumeEMToday I'm announcing a new digital textbook 📖🖥️, "An Introduction to OME-Zarr for Big Bioimaging Data". ome-zarr-book.readthedocs.io
- Reposted by CCP-volumeEMA day in the dark side, from light to electron microscopy image analysis! We're attending today the @ccp-volumeem.bsky.social meeting, discussing approaches to build a collaborative computational community for volume electron microscopy
- Reposted by CCP-volumeEMAre you studying synapses in electron microscopy? Tired of annotating vesicles? We have the tool for you! SynapseNet implements automatic segmentation and analysis of vesicles and other synaptic structures and has now been published: www.molbiolcell.org/doi/full/10....
- Reposted by CCP-volumeEM🌟 Awesome vEM Images Competition deadline extended to Oct 6, 5 PM CT! 🌟 Submit to one or both categories: 1️⃣ The Power of EM 2️⃣ Bringing Meaning to the Data 🏆 $250 for 1st, $100 for 2nd & 3rd (each category) 🔗 www.volumeem.org/awesome-imag... Details and last year's winning images ⬇️
- Reposted by CCP-volumeEM📣 The Awesome vEM Images Competition is back! Submit your images in one of two categories: 🖼️ The Power of vEM 🧠 Bringing Meaning to the Data (New!) 🏆 Prizes: $250 for 1st place, $100 for 2nd & 3rd in each category 📅 Deadline: Oct 2, 5PM CT 🔗 More details: www.volumeem.org/awesome-imag...
- Reposted by CCP-volumeEM📣 Join Us for the 6th Annual Volume EM Community Initiative Town Hall Meeting on October 9th, 2025 from 3-6pm BST / 10am-1pm ET. A key theme of this year’s Town Hall is strengthening connections across the global community. 👉 Register now on our website: www.volumeem.org/2025-town-ha...
- Reposted by CCP-volumeEMBetter ML for cryo-ET starts with better benchmarks. We built a phantom cryo-ET dataset (~500 tomograms) + hosted a Kaggle challenge. The result: community models beat expert tools. Read more in the @natmethods.nature.com article that just came out: 🔗 doi.org/10.1038/s415...
- Reposted by CCP-volumeEMAbstract submission #CBIAS2025 is closing on August 31st - we invite submissions on all topics related to #bioimageanalysis: new tools, biological discoveries using existing methods, and anything in between. Early-career researchers especially encouraged to submit! www.crick.ac.uk/whats-on/cri...
- Reposted by CCP-volumeEMGreat to see one of our own Lucy Collinson picking up the Distinguished Scientist Award at M and M this year. Well deserved and a wonderful accolade. Congratulations Lucy! @royalmicrosoc.bsky.social
- The registration for our #CCPvolumeEM community meeting is now open! Join us in person in London (at @crick.ac.uk) or online on 3rd November to discuss the computational needs of #volumeEM www.eventbrite.co.uk/e/towards-a-... #vEM #BioImageAnalysis
- 🚨 SAVE THE DATE 🚨 Inaugural CCP-volumeEM Community Meeting, 3rd November 2025 at @crick.ac.uk in London "Towards a collaborative computational community for volume EM" Timings: 12pm - 5.30pm, followed by networking reception #volumeEM #BioImageAnalysis #VEM #CCPvolumeEM #CoSeC
- Reposted by CCP-volumeEMIf you’ve ever wondered how we get high resolution images of incredibly tiny things, check out our latest video with @em-stp.bsky.social They discuss how electron microscopes use beams of electrons to see things that light microscopes can’t. www.youtube.com/watch?v=YMAe...
- Reposted by CCP-volumeEMAs life sciences research becomes enmeshed in the age of AI, real experimental data are more valuable than ever. Read more in this month's Editorial. www.nature.com/articles/s41...
- 🚨 SAVE THE DATE 🚨 Inaugural CCP-volumeEM Community Meeting, 3rd November 2025 at @crick.ac.uk in London "Towards a collaborative computational community for volume EM" Timings: 12pm - 5.30pm, followed by networking reception #volumeEM #BioImageAnalysis #VEM #CCPvolumeEM #CoSeC
- The aim of the meeting is to bring together researchers, microscopists, biologists, computer scientists, image analysts, and software engineers to shape the future of computational support for volume electron microscopy (vEM)
- vEM encompasses powerful TEM and SEM-based techniques that enable nanometre-resolution imaging through cellular and tissue volumes, capable of routinely producing terabyte-scale datasets
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View full threadBig thanks for the amazing images by @falk-illustrations.de supported by @zarr.dev and @numfocus.bsky.social and provided to the community under CC BY 4.0 license Falk, H. zarr-developers/zarr-illustrations-falk-2022 | Zenodo [WWW Document], 2022. URL doi.org/10.5281/zeno... (accessed 2025-07-09)
- Reposted by CCP-volumeEMIf you work in #VolumeEM, please fill in our survey to help us build a Collaborative Computational Project for volumeEM! Survey link: forms.office.com/e/eMAJGCKUnc we're aiming to identify the needs of the community in order to build a roadmap for all-things data-related in #vEM
- Reposted by CCP-volumeEMExciting next steps in #volumeEM data analysis! A way to remove the data bottleneck..🍾👏 #mmc2025 @ccp-volumeem.bsky.social @martinjones.bsky.social
- We now have a mailing list for anyone who'd like to get involved with the volume EM collaborative computational community! Sign up at bit.ly/ccp-volume-em to hear all the latest news and opportunities
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- Reposted by CCP-volumeEMNeed help with bioimage analysis? Contact the UK Euro-BioImaging Node to see how we can help! www.eurobioimaging-access.eu/nodes/uk-node
- 🔬𝐔𝐊 𝐄𝐮𝐫𝐨-𝐁𝐢𝐨𝐈𝐦𝐚𝐠𝐢𝐧𝐠 𝐍𝐨𝐝𝐞 𝐬𝐞𝐜𝐮𝐫𝐞𝐬 £𝟏.𝟖𝐌 from @ukri.org This will: -Democratise access to cutting-edge biological and biomedical imaging -Support 200+ researchers yearly -Boost open science Thanks to BBSRC and MRC for this major upgrade! 🚀 Congrats to the entire UK Node team 👏 Link in replies⬇️
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