www.protocols.io
A secure platform for developing and sharing reproducible methods.
- Reposted by www.protocols.io💡 Did you know? Methods are among the most cited research outputs. For #LoveMethods26, join experts for interactive sessions: 👉 Jan 21: @protocolsio.bsky.social Hackathon 👉 Jan 22: Methods Mythbusting Panel spklr.io/633288eAVM #OpenScience
- Reposted by www.protocols.ioHappy International Love Methods week! The Crick partners with @protocolsio.bsky.social to share open methods, and if you happen to be a Crick researcher, you can use their protocol writing up service for free (while codes last!) www.protocols.io/we-enter-pro...
- Join Springer Nature editors and the protocols.io team for two exciting events as part of #LoveMethods26! 💻Transform your protocols at our Hackathon on Jan 21 🔮Gain insight on methods publishing at our Methods Mythbusting on Jan 22 👉FREE registration & more details:
- Reposted by www.protocols.ioOur promoted new resource for January is Protocols.io. Using Protocols.io researchers can create and share detailed experimental protocols with colleagues or the wider scientific community www.protocols.io
- Reposted by www.protocols.ioJoin us for “Methods Mythbusting: Insights from Journal Editors and protocols.io”protocols.io/webinars/met...rs at Love Methods Week 2026excelscior.uc.pt/love-methods...6/ #LoveMethods26
- Reposted by www.protocols.io🎉 We are thrilled to announce that our protocol “Library construction for ONT long read cDNA”, developed at our GenomiqueENS core facility, is available on protocol.io. dx.doi.org/10.17504/protocols.io.4r3l21oepg1y/v1
- Reposted by www.protocols.io🧬Searching for a Nanopore RNA-seq protocol that generates longer reads than the manufacturer’s protocol, and applicable for low-input material ? 🤔
- Reposted by www.protocols.ioReally liking the idea and output of GAQETv2 - such a cool tool for structural genome annotation QC!! www.protocols.io/view/structu...
- Reposted by www.protocols.ioExciting news: Premium protocols.io is now available via Research4Life to researchers in low- & middle-income countries—at no or low cost. 🌟 Full Springer Nature press release: group.springernature.com/gp/group/med... #OpenScience #Reproducibility #GlobalCollaboration #Research4Life #protocolsio
- Reposted by www.protocols.ioSpringer Nature has extended its partnership with @r4lpartnership.bsky.social to provide researchers in more than 90 low-middle-income countries with no-cost or low-fee access to premium features on @protocolsio.bsky.social. Learn more: group.springernature.com/gp/group/med... #Research 🧪
- Reposted by www.protocols.ioLatin American Hub for Bioimaging Through Open Hardware (LIBRE Hub librehub.github.io) is an amazing initiative from @makertobey.bsky.social and colleagues!
- Reposted by www.protocols.ioWe have done our first @protocolsio.bsky.social. Are you interested about #genome_annotation quality evaluation? We have developed a tool called #GAQET2 (github.com/victorgcb198...) which runs several tools like #AGAT, #BUSCO, and many other tools. You can find it at www.protocols.io/view/structu...
- Reposted by www.protocols.ioIt was great to hear from @lteytelman.bsky.social about Protocols.io today for our LIBRE hub channel on open science! We already have a tutorial in Spanish: youtu.be/RuBKWouEyL8?...
- Reposted by www.protocols.ioWith the full CRISPR 7-11 protocol here :)
- Link for the full CRISPR Cas7-11 protocol: www.protocols.io/view/crispr-...
- Reposted by www.protocols.io👏 This month’s Network Spotlight goes to Teams Kordower, Liddle, & Rio! Their open-access protocols ranked among the top 100 most viewed on @protocolsio.bsky.social in August 🎉 ➡️ Mouse Perfusions (bit.ly/4qH6rIY) ➡️ Y-Maze (bit.ly/47aITTC) ➡️ Culture/transfection of HEK293T cells (bit.ly/4o4ytfR)
- Reposted by www.protocols.ioOur new preprint covering the improvements we made to our respiratory metagenomic assay is out now: www.medrxiv.org/content/10.1... ✅ Now implemented in 6 NHS hospitals ✅ Increased sensitivity ✅ Increased pathogen genome coverage (1/3)
- Reposted by www.protocols.ioHere’s a write-up that includes my lightning talk and reflections on why technicians must be recognised in the REF: 🔗 www.researchprofessionalnews.com/rr-news-uk-r... Hope to work with others to get methods formally recognised as reportable research outputs in a category of their own.
- Explore our new featured protocols protocols.io/welcome
- 1. Intracellular Metabolite Extraction, Peak Detection with El-MAVEN and Quantification Using Python V.2 www.protocols.io/view/intrace...
- 2. Water and sediment sampling in the sea to discover marine bacteria www.protocols.io/view/water-a...
- 3. The Spatial Thinking Ability Test (STAT-24):Classroom administration, scoring, and data management www.protocols.io/view/the-spa...
- Reposted by www.protocols.ioI've been dreaming about this for a decade and it's now live! "Global Collaboration Made Easier: Multilingual Protocols Now Available on protocols.io" www.protocols.io/blog/global-...
- Reposted by www.protocols.ioWe published a detailed protocol for our Plate-CUT&Tag method on @protocolsio.bsky.social to accompany our recent preprint (www.biorxiv.org/content/10.1...) give it a try! Feedback welcome! dx.doi.org/10.17504/protocols.io.n2bvjed5wgk5/v1
- Reposted by www.protocols.ioCopy our protocols! 📝 Find many of our lab protocols and techniques on @protocolsio.bsky.social at www.protocols.io/search?q=%22... 🎥 Go deeper with recorded video tutorials of some of our most requested methods: alleninstitute.org/education/sc... #OpenScienceWeek
- Reposted by www.protocols.io[This post could not be retrieved]
- Reposted by www.protocols.ioWe're hiring at protocols.io (@protocolsio.bsky.social) in NY or Jersey City - Associate Scientific Engagement Manager See LinkedIn post for more info & feel free to message me: www.linkedin.com/posts/eganle...
- Reposted by www.protocols.ioProtocols @nmrfam.bsky.social Alex Paterson, Network for Advanced NMR Materials (NAN) Solid-State NMR Data Acquisition Protocols V.2 www.protocols.io/view/network... #NMRchat #NMR 🧲
- Reposted by www.protocols.ioAuthor here to answer any questions. The full protocol is online at protocols.io and all codebooks on github
- Reposted by www.protocols.ioLoad gels? Use #zebrafish 🐟? Want to do more sustainable research w/out compromising science? We-G Gestri, K Turner, G Powell @stevewilsonlab.bsky.social-made these protocols. Yes, we use these in our @science.org+@nature.com papers. www.protocols.io/view/re-usin... www.protocols.io/view/washing...
- Reposted by www.protocols.ioComparative Analysis of Phage Profiles in Environmental Samples: Metagenomic Sequencing Versus Culture-Based Isolation www.protocols.io/view/compara...
- Reposted by www.protocols.ioHappy to answer any and all questions about this work. We'd love to see more people try it. Full protocol: www.protocols.io/view/craftse... Full analysis: github.com/immunogenomi...
- Reposted by www.protocols.ioI am very excited to share our publication, out now in Nature, detailing our developed CRAFTseq methodology for capturing and analysing single cell genomic DNA amplicons alongside the transcriptome and cell surface protein expression. www.nature.com/articles/s41...
- Reposted by www.protocols.ioThe easiest publishing process ever! After testing & retesting this protocol adapted from a large-volume industry standard method, I finally clicked “Publish” over at @protocolsio.bsky.social today. Can recommend; would publish again!! 🌾 🍞 🧪 dx.doi.org/10.17504/pro...
- Reposted by www.protocols.io🚨🚨 We just published a protocol for non-lethally measuring morphology in 3D in small aquatic organisms!! 🚨🚨 www.protocols.io/view/non-let... The work was led by undergrad Daniela Granados 🎉🎉 and our collaborators include Najva Akbari, and Lauren O'Connell!
- Reposted by www.protocols.ioLast month we published our protocol for detection of beet yellows virus. Here it is! RT-LAMP for BYV detection www.protocols.io/view/rt-lamp...
- Reposted by www.protocols.ioqPCR diagnosis of #diphtheria: you may be interested by our procedure, which is now widely used across European reference laboratories: www.protocols.io/view/identif... @EURLdiphtheriaPertussis thanks @chcrestani.bsky.social for releasing on protocols.io
- Reposted by www.protocols.ioHappy to be in Brno for the #CTLS2025 conference from the Core Technologies for Life Sciences society. I'll be talking about protocols.io tomorrow morning in the Core Facilities and Open Science session
- Spotlight interview with Maria Diehl regarding her PLOS ONE Lab Protocol paper: "Modifying the platform-mediated avoidance task: A new protocol to study active avoidance within a social context in rats." @realdiehllab.bsky.social
- Reposted by www.protocols.ioFor scientific writers: Three things your Methods section shouldn't be - but three things Methods sections often end up being. You can avoid these mistakes! scientistseessquirre...
- Reposted by www.protocols.ioA fantastic start to #OSFest25 this morning, looking at publishing methods and protocols with @protocolsio.bsky.social. With three different sessions tomorrow and more over the week ahead, it’s not too late to have a look at the festival schedule and register your place: buff.ly/jZsSd6U
- Reposted by www.protocols.ioThis month, we are recognizing the Assessment of Motor and Non-Motor PD Symptoms Working Group as our Network Spotlight! They shared protocols to support more reproducible rodent behavioral assays in #ParkinsonsDisease research 🐁 🧠 🔗 Check them out: www.protocols.io/view/behavio...
- Reposted by www.protocols.ioToday. bsky.app/profile/ltey...
- Reposted by www.protocols.io🥼 Do you want to start working with human pluripotent stem cells? 📖 Check out our protocols collection "Good practices in hPSC handling", developed among the CorEuStem COST Action Project at COST Association #stemcells www.protocols.io/view/good-pr...
- Reposted by www.protocols.ioTalking about training and opportunities for technicians around publishing. We're trying to get ours interested in using protocols.io to share work they're already doing optimising protocols. #DARTS9
- Reposted by www.protocols.ioWhy so detailed? I did Hydra care as a postdoc and when I tried to set up our lab Hydra it went horribly! After joining our lab, Kelso looked through multiple protocols and did some troubleshooting until our lab populations were thriving.
- Reposted by www.protocols.ioInterested in studying Hydra? Our lab researcher Kelso Cochran wrote a comprehensive protocol (used to train all of our undergrads) now shared on protocols io on how to get started www.protocols.io/view/compreh...
- The protocols from Protocol Exchange are now live on protocols.io, expanding the @protocolsio.bsky.social repository from 21,000 to 23,000 public protocols. www.protocols.io/blog/protoco...
- Spotlight interview with Fotios Alexandros Karakostis regarding his PLOS ONE Lab Protocol paper: "Introducing “Validated entheses-Based reconstruction of activity 2.0” (VERA 2.0): Semi-automated 3D analysis of bone surface changes."
- Reposted by www.protocols.ioYou've heard about the upcoming festival, but let's take a look at some of the individual sessions! The first event on the programme is taking place in person at @crick.ac.uk and will be featuring experts from @protocolsio.bsky.social. The workshop is open to all.
- Spotlight interview with Daniel Foulkes regarding his PLOS ONE Lab Protocol paper: "Stable topical application of antimicrobials using plumbing rings in an ex vivo porcine corneal infection model."
- Reposted by www.protocols.ioWhen publishing the first benchmarking data for a new sequencing technology like CycloneSeq, it's great having @protocolsio.bsky.social to share the protocols in a transparent manner. CycloneSEQ Library Construction and Sequencing Protocol for Isolated Bacteria. dx.doi.org/10.17504/pro...
- Reposted by www.protocols.ioAre you a researcher who'd like to know more about creating open methods & protocols? Can you be in London 2nd June am? Then come to the training event that the Crick & protocols.io are putting on for the Open Science & Scholarship Festival. Register here: forms.office.com/e/EecPjyU1UU
- Spotlight interview with Elisa Crisci regarding her PLOS ONE Lab Protocol paper: "High-throughput 96-well plate-based porcine antibody isolation protocol."
- Reposted by www.protocols.ioI'm late to the party, but here's a 🦋 intro! I'm a postdoc at Stanford studying how the hippocampal circuit supports multiple aspects of spatial memory and how it goes awry in aging and #Alzheimers. Starting my own lab soon 👀 👉 www.biorxiv.org/content/10.1... 👉 www.protocols.io/view/chronic...
- Reposted by www.protocols.io"From Lab to Field - Advancing eDNA Research with protocols.io" (Webinar on Wednesday, April 30th, 2pm EST) communities.springernature.com/posts/upcomi...
- "From Lab to Field - Advancing eDNA Research with protocols.io" (Webinar on Wednesday, April 30th, 2pm EST)
- Reposted by www.protocols.io🧠🧬 This work was conducted by Eva Geoghegan as part of the Brain Data Alchemy Project, within a collaboration between the Wakil lab (@huda-akil.bsky.social) at Univ. of Michigan (@ummni.bsky.social) and the Hen lab at Columbia University (@phi-nguyen.bsky.social). www.protocols.io/view/brain-d...
- Reposted by www.protocols.io🧠🧬 We still don’t know how antidepressants *actually* work. Why does depression respond to treatments as diverse as SSRIs, TCAs, electroconvulsive therapy, TMS, tianeptine, and ketamine? What do these treatments have in common? (hint: not serotonin) See our new preprint! doi.org/10.1101/2025...
- Reposted by www.protocols.ioThrilled to share the new & open-access "VERA 2.0" method and its experimental validation: a semi-automated, fast, and reliable protocol for reconstructing past physical activity from skeletal remains! Validation paper: doi.org/10.1371/jour... Protocol: protocols.io/view/protoco...
- Spotlight interview with Fernando Lopes and Conrad Gillett regarding their PLOS ONE Lab Protocol paper: "From museum drawer to tree: Historical DNA phylogenomics clarifies the systematics of rare dung beetles (Coleoptera: Scarabaeinae) from museum collections."
- Reposted by www.protocols.io🍵Read our April issue Editorial on how integrating protocols.io into the submission process makes collaborative protocol sharing and peer review seamless for authors and referees in a step towards open science. 👉https://rdcu.be/eicaY bit.ly/42hNWk3
