Matt Parker
Director, Clinical Bioinformatics Software at Oxford Nanopore in the EPI2ME team. Interested in regulated application of Nanopore sequencing. Also bikes, beers, trains, and the American Office.
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- Reposted by Matt ParkerNew blog post! In it, I benchmark the new version of Dorado from @nanoporetech.com, which comes with new DNA basecalling models. Short version: big accuracy gains for hac, small improvements for sup. Check it out for the full results: rrwick.github.io/2025/05/27/d...
- The @nanoporetech.com #EPI2ME team is hiring! If you want to build workflows to analyse @nanoporetech.com sequencing data for end to end applications then this job is for you! ejnh.fa.em2.oraclecloud.com/hcmUI/Candid...
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- Reposted by Matt ParkerPeter Marks’s resignation letter. Everyone should read this.
- Reposted by Matt ParkerLess than two months to @nanoporetech.com London calling. Anyone secretly testing new pores? Kit chemistry? Devices?
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- #AGBT2025 #AGBTGM has been incredible. Lucky to be part of the event with @nanoporetech.com - as always we were so looked after by our amazing events team! (Photo credit to @minomatt.bsky.social)
- Stop by the @nanoporetech.com Lanai suite #190 at #AGBT2025 #AGBTGM tonight after the welcome reception. We’re open from 7pm. We can’t wait to PORE you a beverage. 😂
- Stop by the @nanoporetech.com Lanai suite #190 at #AGBT2025 #AGBTGM tonight after the welcome reception. We’re open from 7pm. We can’t wait to PORE you a beverage. 😂
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- My 1st “computer” - I remember that genesis motherboard being very in the way when we tried to upgrade the RAM!
- Reposted by Matt ParkerJoin us next week for a webinar on 🧬nanopore sequencing 🧬 featuring speaker Stephanie Chrysanthou of MSK Cancer Center. Learn about the fundamentals, applications and impacts — and earn CE/CMLE credits. educate.amp.org/local/catalo...
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- Reposted by Matt ParkerOur research this year covered: 🔬 TB diagnostics and technological innovations 💉 TB vaccines and preventive strategies 💊 Drug resistant #TB (DR-TB) and treatment innovations 🙌 Post-TB care and person-centred approaches 💸 Economic and #PublicHealth impacts of TB Find them here:
- Merry Christmas! Smoked port old fashioned to finish me off 🥂
- Reposted by Matt ParkerDue to the limitations of short read sequencing, this mutation has remained hidden for more than 25 years since ASPA mutations were first characterized in individuals Canavan disease. 2/
- I gave the @seqera.io @nextflow.io AI the challenge of writing me a workflow that produced a really grumpy Christmas message. Damn guys - what you been feeding this thing??
- This is mega!
- Ever get lost searching through genetic literature? We've built a new interface for bioRxiv+medRxiv to directly browse preprint findings on the genome! (1/N) Try genorxiv: sitlabs.org/genorxiv
- Reposted by Matt ParkerNew release of Canu - first one in over 3 years! github.com/marbl/canu/r... The notes say this will be the very last release. Many thanks to its devs Brian Walenz and @sergek.bsky.social. Canu may be a bit old and it's certainly not fast, but it makes good assemblies and so I still use it!
- Reposted by Matt Parker🎄 New Dorado release (v0.9.0) – and it's big! 🚀 Dorado polish command (experimental) for improving draft assemblies – faster & more accurate than Medaka ⚡ Faster modified base calling models 🔧 Usability & accuracy improvements: PolyA, Barcoding, 6mA calling github.com/nanoporetech...
- Reposted by Matt ParkerIn #NextGenSequencing news, Oxford @nanoporetech.com has released a new version of their basecalling software with new functionalities. An explainer ow what the basecalling software is and what this new release brings for ONT users. github.com/nanoporetech...
- @nanoporetech.com #EPI2ME Christmas party tonight!!!
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- The things you find around the @nanoporetech.com headquarters! #WYMM
- Reposted by Matt ParkerPlease share with your Biomedical & Clinical Science friends on 🦋 - let’s build our network up again❤️
