Eugene F. Baulin
- Reposted by Eugene F. Baulin[Not loaded yet]
- Enjoyed every piece of it!
- Reposted by Eugene F. BaulinA recent manuscript describing our and others’ efforts to predict the solvation shell of a group I intron is now available on bioRxiv! 🔬 doi.org/10.1101/2025...
- Meet ClaPNAC - a Classifier of Protein–Nucleic Acid Contacts. ClaPNAC identifies various types of nucleotide-aminoacid contacts in 3D structures of NA-protein complexes. More in the preprint: doi.org/10.1101/2025... #Bioinformatics #Protein #RNA #DNA #Structure #Contact #3D
- Reposted by Eugene F. Baulin[Not loaded yet]
- Happy to share, ARTEM is now published in Genome Biology! doi.org/10.1186/s130... ARTEM enables screening RNA and DNA 3D structure databases for arbitrary 3D motifs. Kink-turns, G-quadruplexes, GNRA tetraloops, i-motifs, you name it! #Research #Bioinformatics #3D #RNA #DNA
- Thanks to @iimcb.bsky.social, imol.institute, @ncn.gov.pl, @embo.org, @jmbujnicki.bsky.social, and all the co-authors!
- Turns out RNA can make a GNRA tetraloop-like motif out of almost anything! Like in these pentaloops, whose looped-out bases interact with proteins. Read the preprint: biorxiv.org/content/10.1... #RNA #Structure #3D #GNRA #Tetraloop #Motif #Research #RNAprotein #Interactions
- 📢#Job Alert: The Lab of #RNA #Algorithms @ imol.institute has an open position for a #PostDoc interested in RNA computational biology. Apply before July 10th: euraxess.ec.europa.eu/jobs/350755 Please spread the word! #Academia #Position #Research #Bioinformatics #Poland #Warsaw #Hiring
- #HiringAlert Looking to tackle computational challenges of RNA folding and binding? Come build new RNA algorithms as a #postdoc in my lab! More info: euraxess.ec.europa.eu/jobs/350755 #Academia #Position #Job #Research #RNA #Structure #3D #Bioinformatics #Poland #Warsaw #IMolPAS #NCN
- 📢Job Alert: Postdoctoral Researcher in the Laboratory of RNA Algorithms at imol.institute, up to three years, fully funded by @ncn.gov.pl Details here: euraxess.ec.europa.eu/jobs/350755 #postdoc #Academia #Position #Job #Research #RNA #Structure #Bioinformatics #Poland #Warsaw #IMolPAS #NCN
- Reposted by Eugene F. Baulin[Not loaded yet]
- Couldn’t wait to share - SQUARNA 2.0 is here, with greatly improved performance in single-sequence RNA secondary structure prediction! github.com/febos/SQUARNA Updated preprint is coming soon :) #SQUARNA #RNA #2D #Structure #Prediction #Bioinformatics #Research #Pseudoknot
- The coordination loop in group II introns forms a chimeric kink-turn that involves a long-range base pair (A251-U326). More weird kink-turns in our recent preprint: doi.org/10.1101/2024... #RNA #ARTEM #Kinkturn #Kturn #Motif #Bioinformatics #Science #Research #StructuralBiology
- The International Institute of Molecular Mechanisms and Machines Polish Academy of Sciences (IMol) seeks candidates for Group Leader positions. Extended deadline: March 24, 2025.
- Our ARTEMIS tool for aligning 3D structures of nucleic acids is now equipped with a detailed Tutorial, covering structure searches, sub-optimal matches, and even PDB/CIF conversion, check it out: github.com/david-bogdan... #RNA #DNA #structure #3d #alignment #bioinformatics #research #PDB #tutorial
- I’m happy to have contributed a tiny part to this exciting research!
- (1/15) Yet another sweet bioinformatics "software+database" couple from our team: Meet MIXALIME, a framework for assessing allelic imbalance, and UDACHA, a database of allele-specific chromatin accessibility, read more at www.nature.com/articles/s41...
- Happy to share, DesiRNA is now published at Nucleic Acids Research! doi.org/10.1093/nar/... DesiRNA is a tool for RNA sequence design (inverse folding) and it is the first to solve all 100 puzzles in the Eterna100 benchmark within 24 h! #RNA #Design #Research #Bioinformatics #Science #Structure
- Our ARTEM tool for #RNA #3D #motif search does not rely on annotated pairwise interactions. It could identify a D-loop/T-loop-like motif with 2 non-interacting pyrimidines (U206/U233, right) instead of the characteristic long-range base pair (left). Find out more: doi.org/10.1093/nar/... #research
- These recurrent RNA "staple" interactions were reported in our recent paper in NAR. They are inherently non-planar and not decomposable into base pairs, therefore remain invisible to existing annotation tools. Find out more: doi.org/10.1093/nar/... #RNA #research #Bioinformatics #motif #Staple
- Reposted by Eugene F. Baulin[Not loaded yet]
