Sean Davis
- Reposted by Sean Davis[Not loaded yet]
- Course materials from the most recent iteration of the Statistical Analysis of Genome-scale Data course at @cshlnews.bsky.social. seandavi.github.io/RBiocBook/ Thanks to many contributors and to several years' worth of students. Always a work-in-progress...
- Reposted by Sean Davis[Not loaded yet]
- Reposted by Sean DavisThey've put Christine Grady, chief of the department of bioethics at the NIH’s Clinical Center on admin leave. I've worked w/her a lot. A WONDERFUL bioethicist (& person—a saint!). Fired for personal reasons? She's Fauci's wife. They have no shame.
- Reposted by Sean DavisWhat are they doing? And why? @dahlialithwick.bsky.social
- Given the recent and ongoing service interruptions in PubMed, National Library of Medicine, NIH Reporter, etc., I put together a status page that covers a few key resources and some NIH institute pages. stats.uptimerobot.com/Zrqh8AhvKn Let me know what other sites you'd like to see added.
- Reposted by Sean DavisFrancis Collins, the NIH Director for 12 years, led the Human Genome Project and other NIH efforts for 32 years, resigned today. Key words from his resignation letter www.nytimes.com/2025/03/01/u...
- Anyone else finding that ncbi.nlm.nih.gov and related subdomains are down right now?
- The @bioconductor.bsky.social Zenodo community accepts any contributions related to or Bioconductor. It is a great way to share software, of course, but also slides, talks, posters, workflows, etc. All contributions to zenodo get a doi. zenodo.org/communities/...
- Reposted by Sean Davis📣 GBCC2025 Abstracts & Registration Open! Join us June 23-26, 2025, at Cold Spring Harbor Lab for the first Galaxy & Bioconductor Community Conference. 🗓 Abstract Deadline: April 1 🔗 Submit/Register: gbcc2025.org #GBCC2025 #Bioconductor #DataScience #OpenSource
- @msftresearch.bsky.social and @carnegiemellon.bsky.social published a study examining self-reported reductions in cognitive effort and confidence among knowledge workers utilizing #AI. Not the complete picture, but provides insight, challenges, and opportunities. www.microsoft.com/en-us/resear...
- Reposted by Sean DavisscGPT-spatial: Continual Pretraining of Single-Cell Foundation Model for Spatial Transcriptomics biorxiv.org/content/10.1101/202… 🧬🖥️🧪 github.com/bowang-lab/scGPT-sp…
- The data at statecancerprofiles.cancer.gov are a valuable source of information about nationwide #cancer incidence and mortality. To address the lack of an API or data download, we have generated data extracts for dashboards, data integration, #epidemiology research, etc. github.com/seandavi/sta...
- Reposted by Sean DavisIn case folks are interested in contacting their congresspeople about the NIH indirect cuts with some estimates of what they would mean for institutions in their state, here are some estimates based on published F&A rates and funding ... let me know if you want a particular state
- Reposted by Sean DavisWe’re thrilled that our first paper on the Human Microbiome Compendium, an integrated dataset of over 168,000 uniformly processed human gut microbiome samples, is officially out today in Cell! @richabdill.com @blekhman.bsky.social www.cell.com/cell/fulltex...
- Application of ChatGPT in #oncology #research analyzed 91k US cancer crowdfunding stories and found that over one-third reported medical or social hardships like housing or food insecurity, with few meeting fundraising goals. jamanetwork.com/journals/jam...
- Six years on, github.com/seandavi/awe... is still going strong. Contributions welcome. Fastest growing category recently has been spatial transcriptomics. #compbio #singlecell #transcriptomics #genomics #awesome-list
- Reposted by Sean Davis[Not loaded yet]
- Reposted by Sean Davis[Not loaded yet]
- A large-scale audit of dataset licensing & attribution in #AI text datasets. rdcu.be/dZzux Dataset licenses are frequently missing or wrong on popular dataset hosting sites. Interactive Data Provenance Explorer: dataprovenance.org #DataTransparency #AIethics #MachineLearning
- Reposted by Sean Davis[Not loaded yet]
- Reposted by Sean Davis[Not loaded yet]
- Reposted by Sean DavisMapping cellular interactions from spatially resolved transcriptomics data nature.com/articles/s41592-024… (read free: rdcu.be/dSTC5) Spacia software: github.com/yunguan-wang/Spacia 🧬🖥️
