GAMA Miguel Angel
Biologist that navigate in the oceans of diversity through space-time
Protein evolution, metagenomics, AI/ML/DL
Website miangoaren.github.io
- Sometimes I see Nature papers as elegant $13k commercials from AI companies inviting you to subscribe to their chatbots
- I recorded ~4h where we cover the main bio databases, data processing methods, many sources of bias and topics like generalization and data leakage :) youtu.be/SKpHaHgvCKE Slides drive.google.com/file/d/1jpEwDBncJCRviG_DaWs2EpzCL_1BfB9t/view English is available only via auto-translated subtitles
- I recorded ~8h introducing the main algorithms for protein design: from classical approaches to protein language models, AlphaFold, ESMFold, MPNN, diffusion models and more :) youtu.be/wKUYtAt87d4T... Slides drive.google.com/file/d/1EPLj... English is available only via auto-translated subtitles
- I’ve recorded ~8h explaining the architectures of AlphaFold, AF2 & AF3, as well as the context needed to understand their development, applications and limitations :) youtu.be/_jDRr5BcTaY Slides drive.google.com/file/d/1i4QE... English is available only via auto-translated subtitles
- The 7th lecture is available on YouTube :) We will review how proteins emerge and diversify throughout evolution, considering mutations and molecular interactions youtu.be/qaypRS8SX5M Slides drive.google.com/file/d/1BfQd... English is available only via auto-translated subtitles
- 2/2 I’ve reviewed many courses, yet few give evolution the importance it deserves. They acknowledge it, but rarely go beyond algorithms like AlphaFold. Understanding evolution helps us understand how our models are biased and how to mitigate those biases.
- The 6th lecture is now available on YouTube :) We’ll review how proteins adopt their 3D shape, how they perform their functions and how their activity is regulated youtu.be/cZs8XtVYa5A Slides drive.google.com/file/d/1TpPj... English is available only via auto-translated subtitles
- The fifth lecture of the course is now available on YouTube :) We’ll review amino acid chemistry and how we organize and classify proteins youtu.be/gE6qXwpBP_s Slides drive.google.com/file/d/1F99V... For now, the English version is only available through the automatic translation of the subtitles
