Boston Protein Design and Modeling Club
We are a global community of computational protein engineers and modelers from both academia and industry.
An @omsf.io project organized by @cdbahl.com, @sokrypton.org, and @nickpolizzi.bsky.social
https://bpdmc.org
- Don't worry if you missed the excellent seminar by Mike Nichols and Erik Swanson from @manifoldbio.bsky.social this week because you can check out the recording 👇 youtu.be/u9dznMvcDs4
- quick reminder to join us at @mit.edu tonight for our first meeting of 2026!
- Happy New Year! We've got an exciting seminar to kick off 2026 Wednesday, January 21st at 7pm EST Room 181, Building 68 @mit.edu speaker: Erik Swanson and Mike Nichols "mBER: Controllable de novo antibody design with million-scale experimental screening" bpdmc.org
- If you couldn't make it for @yehlincho.bsky.social's rockstar seminar last night, have no fear because you can check out the recording 👇 youtu.be/yCOlC_yj4kc
- quick reminder to join us tonight for our final meeting of 2025 - it's going to be a great seminar by @yehlincho.bsky.social that you won't want to miss!
- Join us Wednesday December 10th for an amazing seminar by @yehlincho.bsky.social to cap off 2025. See you at 7pm EST in Room 6055, Longwood Center @danafarber.bsky.social "How AF3-Style Structure Prediction Models Can Be Used for Protein Design: BoltzDesign and Protein Hunter" bpdmc.org
- Join us Wednesday December 10th for an amazing seminar by @yehlincho.bsky.social to cap off 2025. See you at 7pm EST in Room 6055, Longwood Center @danafarber.bsky.social "How AF3-Style Structure Prediction Models Can Be Used for Protein Design: BoltzDesign and Protein Hunter" bpdmc.org
- Don't fret if you weren't in the room this week when @ginaelnesr.bsky.social gave her stellar seminar because you can check out the recording 👇 youtu.be/I-utRMS84E8
- quick reminder to join us at DFCI tonight for a spectacular talk by @ginaelnesr.bsky.social!
- We can't wait until Wednesday, November 19th 2025 to arrive because we have @ginaelnesr.bsky.social from @possuhuanglab.bsky.social speaking at 7pm EST in Room 6055, Longwood Center, @danafarber.bsky.social "Learning millisecond protein dynamics from what is missing in NMR spectra" bpdmc.org
- We can't wait until Wednesday, November 19th 2025 to arrive because we have @ginaelnesr.bsky.social from @possuhuanglab.bsky.social speaking at 7pm EST in Room 6055, Longwood Center, @danafarber.bsky.social "Learning millisecond protein dynamics from what is missing in NMR spectra" bpdmc.org
- Reposted by Boston Protein Design and Modeling Club[Not loaded yet]
- If you missed the amazing seminar by @marinkazitnik.bsky.social last month, the recording is now available! 👇 youtu.be/mkTgopOhSR4
- have no fear if you weren't in the packed lecture hall at @mit.edu last week for @grocklin.bsky.social's brilliant seminar - you can check out the recording 👇 youtu.be/KKXe8a_h88c
- thanks everyone who packed the house tonight at @mit.edu for an incredible seminar by @grocklin.bsky.social!
- quick reminder to come see @grocklin.bsky.social tonight at @mit.edu!
- Join us in Room 181, Building 68 @mit.edu on October 22nd 2025 @ 7pm EDT to see @grocklin.bsky.social present a mind blowing amount of data and learn what becomes possible at this scale "Predicting protein folding stability and aggregation propensity using large-scale experiments" bpdmc.org
- Join us in Room 181, Building 68 @mit.edu on October 22nd 2025 @ 7pm EDT to see @grocklin.bsky.social present a mind blowing amount of data and learn what becomes possible at this scale "Predicting protein folding stability and aggregation propensity using large-scale experiments" bpdmc.org
- quick reminder to join us at @danafarber.bsky.social tonight for a spectacular seminar by @marinkazitnik.bsky.social!
- Our September seminar was delayed a couple weeks, but our speaker @marinkazitnik.bsky.social is well worth the wait. Join us this Wednesday, October 1st 2025 at 7pm EDT in Room 6055, Longwood Center, @danafarber.bsky.social "Empowering Biomedical Discovery with AI Scientists” bpdmc.org
- Our September seminar was delayed a couple weeks, but our speaker @marinkazitnik.bsky.social is well worth the wait. Join us this Wednesday, October 1st 2025 at 7pm EDT in Room 6055, Longwood Center, @danafarber.bsky.social "Empowering Biomedical Discovery with AI Scientists” bpdmc.org
- If you missed seeing @colby.tuple.xyz's excellent talk back in July, you can now check out the recording 👇 youtu.be/k63Xh-oJMs0
- Have no fear if you weren't in the packed audience this week for @martinpacesa.bsky.social's awesome seminar, because you can check out the recording 👇 youtu.be/qQihl6If9vU
- Fun fact: #bindcraft evolved from a binder design tutorial originally developed for BPDMC! Come see @martinpacesa.bsky.social tonight at 7pm EDT in Room 181, Building 68, @mit.edu "BindCraft: one-shot design of functional protein binders" bpdmc.org
- quick reminder to join us tonight at @harvardmed.bsky.social for a great talk by Colby Ford @colby.tuple.xyz
- Come learn about how to run the computational infrastructure that's powering the protein design revolution July 9th 2025 at 7pm EDT in TMEC250 @harvardmed.bsky.social "Model. Package. Deploy. Repeat: A DevOps Approach to Biomolecular Scalability" Colby Ford @colby.tuple.xyz bpdmc.org
- Come learn about how to run the computational infrastructure that's powering the protein design revolution July 9th 2025 at 7pm EDT in TMEC250 @harvardmed.bsky.social "Model. Package. Deploy. Repeat: A DevOps Approach to Biomolecular Scalability" Colby Ford @colby.tuple.xyz bpdmc.org
- Don't fret if you missed Silvi Rouskin's brilliant and engaging talk on #RNA structure last night - you can check out the recording 👇 youtu.be/oS_Cb-YMymw
- Protein isn't the only amazing macromolecule that folds into 3D shapes - come see Silvi Rouskin in Room 181, Building 68 at MIT on Wednesday, June 11th at 7pm EDT to learn more about #RNA structure design and modeling! "RNA Function, Design, and Modeling" bpdmc.org
- If you missed out on Sarel Fleishman's extraordinary talk last night, have no fear - you can check out the recording 👇 youtu.be/2aaWh8yVq8U
- quick reminder to come join us tonight at 7pm EDT to see Sarel Fleishman!
- Our speaker next week is an amazing scientist from out of town, and this is one that you won't want to miss! Thursday, May 15th, 7pm EDT Cannon Room, Building C, @harvardmed.bsky.social Sarel Fleishman www.fleishmanlab.org "Designing new and improved functions in natural protein folds" bpdmc.org
- Our speaker next week is an amazing scientist from out of town, and this is one that you won't want to miss! Thursday, May 15th, 7pm EDT Cannon Room, Building C, @harvardmed.bsky.social Sarel Fleishman www.fleishmanlab.org "Designing new and improved functions in natural protein folds" bpdmc.org
- and please note the change in date!
- in case you missed the superb seminar that Ben Fry gave back in January, you can now check out the recording youtu.be/IgFgAYQrke4 and the preprint www.biorxiv.org/content/10.1...
- Reposted by Boston Protein Design and Modeling ClubSuper excited to share a new preprint from our lab on design of small-molecule binding proteins using neural networks! The paper has a bit of everything. A new graph neural network, new design algorithms, and experimental validation. www.biorxiv.org/content/10.1... 🧵🧪
- If you missed @lindseyguan.bsky.social's outstanding talk last week, you can check out the recording 👇 youtu.be/R87pmoB3QF0
- We're so excited - our upcoming seminar will be by Lindsey Guan on Wednesday, April 9th 2025 starting at 7pm EDT in Room 181, Building 68, MIT @mitofficial.bsky.social "Interpreting state-of-the-art structure predictors for protein-peptide complexes" bpdmc.org
- if you missed seeing Seth Fraden's great seminar last night, have no fear - you can check out the recording: youtu.be/zyJmWLzkh7Q
- quick reminder - don't miss out on an awesome seminar by Seth Fraden tonight!
- Reposted by Boston Protein Design and Modeling Club[Not loaded yet]
