ayakimovich.bsky.social
I am a group leader at Helmholtz in Görlitz, Germany and an Associate Prof of CS at Uni Wroclaw, Poland. My group is working on Machine Learning for Infection and Disease. Personal account and opinions. Website: ayakimovich.github.io / www.casus.science
- The application is still open under: www.hzdr.de/db/Cms?pNid=... | www.casus.science?page_id=18600 | @casusscience.bsky.social | @hzdr.bsky.social
- New Year – new tool for tackling inverse problems in microscopy! TLDR; what’s so new? Fluorescence micrographs are mostly background – stop wasting neurons and check out our sparsity-efficient approach! www.nature.com/articles/s44... | @casusscience.bsky.social | @hzdr.bsky.social
- Come work with us! www.hzdr.de/db/Cms?pNid=...
- Season's greetings from the University of Wroclaw which I passed by to give a talk at the second symposium on #AI ∀, just to be amazed at the plethora of local algos and applications! (and yes this Xmas tree thinks it's better than yours)
- There's a fully funded postdoc position available in my group starting next year. Prerequisites: you know that python is not just a snake 🐍, pi is not just a dessert 🎂, policy is more than insurance 📃, proteins and training don't just mean gym 🏋️ to you. DM if interested.
- This year for Halloween I will be the Schienenersatzverkehr 👻
- Sometimes you just need the flexibility of a #Python library! We present the "Pandas for clonal phenotypes", #PyPlaque aims to do just that! www.nature.com/articles/s41... @hzdr.bsky.social @casusscience.bsky.social 🧪
- had a great time talking about #GenAI for improving microscopy at the #FoB @hzdr.bsky.social @casusscience.bsky.social
- Always great to be back to #Basel, you might think that staying in hotel 2.7182.. is irrational, but the night rates are quite natural! #FoB here we go!
- I'll be speaking at the Festival of Biologics 2025 in Basel next week. If you're interested, pass by and please pick up one of my FREE passes: i.snoball.it/p/IGqAE/l/7 #FestivalOfBiologics @hzdr.bsky.social @casusscience.bsky.social
- looking forward to talking about #Microscopy, #GenAI, and virological plaques at the 8th International Symposium on Systems Biology of Microbial Infection in beautiful Jena!
- #BuildingBridges in Dresden! Excited to talk about #GenAI for #Microscopy tomorrow! @casusscience.bsky.social @hzdr.bsky.social
- Had a blast discussing #microscopy and #AI at BNMI in beautiful Gothenburg!
- I am happy to share that I have recently been invited and joined the editorial board of mSphere - a journal of the @asm.org journals.asm.org/journal/msph... @casusscience.bsky.social @hzdr.bsky.social
- German railways maintain an unmatched level of backward compatibility! 🧑💻
- Drop me a line if you're in sunny 😎 Manchester today/tomorrow @casusscience.bsky.social
- Maybe it is time to rethink the big conferences... #AI
- After #fluorescencefriday comes #superresolutionsaturday if you still can spell it!
- Reposted by ayakimovich.bsky.socialI‘m looking forward to visiting the Center for Advanced Systems Understanding (#CASUS) tomorrow in Görlitz! I will be giving a talk to CASUS and other @hzdr.bsky.social researchers at 14:00. Details: www.casus.science?page_id=15608
- Had a blast talking about #BioMed #AI at the International Urogynecological Association (IUGA) conference in beautiful Barcelona @hzdr.bsky.social @casusscience.bsky.social
- Reposted by ayakimovich.bsky.social🔥Just out @EGPGV’25: Parallel visualization of distributed volume data for non-convex decompositions! @csbdresden.bsky.social @tudresden.bsky.social @mpi-cbg.de And the best: code is contributed upstream 🤩 diglib.eg.org/items/3aed38...
- It never ceases to amaze me how much information we can get just by looking at the gradients in #BioImageAnalysis #AI #GenAI Kudos Ivo F. Sbalzarini and the group! 🧪 @mosaicgroup.bsky.social @hzdr.bsky.social @mpi-cbg.de @casusscience.bsky.social onlinelibrary.wiley.com/doi/10.1002/...
- Generation of a new #fluorescent reporter #virus could often take years! Here, we propose to use #AI #VirtualStaining to detect infection, by providing a #baseline and a #benchmark for #RV, #HAdV, #IAV, #HSV and #VACV. 🧪@casusscience.bsky.social @hzdr.bsky.social www.nature.com/articles/s41...
- Oh hello there @embl.org
- I'll be giving a talk and taking part in a panel at @embl.org Heidelberg next Wednesday. Drop me a line if you have time for a ☕ #AI4Science @casusscience.bsky.social @hzdr.bsky.social 🧪
- Conceived by Félix d’Herelle, plaque assay remains the cornerstone of #Virology and #Microbiology. In our recent work, we bring it to the era of #AI by collating mobile photos benchmark and proposing an e2e baseline @casusscience.bsky.social @hzdr.bsky.social www.nature.com/articles/s41... 🧪
- Was amazing to speak at the good old @uzh-ch.bsky.social
- The lack of high-quality annotated #datasets is hampering applications of #AI in Optical #Microscopy. Let's change this together! I'm honored to be serving as the collection's Guest Editor. More in: go.nature.com/4hyDnNK 🧪 @natureportfolio.nature.com @casusscience.bsky.social @hzdr.bsky.social
- Down the memory lane giving a talk at the Crick AI club today! 🧪
- Helmholtz-ELLIS Workshop on Foundation Models in Science
- When you cross the Atlantic and accidentally time travel presenting your phone's AI with a good old fashioned paradox 🤯
- Our new press release is out! www.hzdr.de/db/Cms?pOid=... @hzdr.bsky.social @hzdr.bsky.social @helmholtzai.bsky.social 🧪
- Come check out the poster 100 at #ICLR
- The one and only Andrew Ng at #AAAI!
- #AAAI in beautiful Philly, here we go, check out our contribution arxiv.org/abs/2406.04388
- 🧪
- I am happy to share that I can now be found amongst the Helmholtz AI associates www.helmholtz.ai/applied-ai/a...
- Oh, hello #Cologne!
- I will be giving a short Zoom talk on our latest work at the @helmholtzai.bsky.social Food for Thought Seminar events.hifis.net/event/2177/
- 🔍 Seeking an enthusiastic MSc or project student. Ideal candidate should have strong knowledge in PyTorch and Biochemistry. Dive into the dynamic world of proteins with us and contribute to advancing AI models. Let’s explore life at the molecular level together! 🧬💡 🧪 #AIinBiology
- Happy to share our last contribution for this year! As it turns out a spoonful of physics helps mitigate hallucinations in computational super-resolution microscopy achieved through gen #AI www.nature.com/articles/s44... @hzdr.bsky.social @mdc-berlin.bsky.social
- 🧪
- Accepted to AAAI right for Xmas! Single Exposure Quantitative Phase Imaging with a Conventional Microscope using Diffusion Models 🧵 #AI @www.helmholtz.de @uclofficial.bsky.social
- Quantitative information in label-free microscopy can be captured by the change in the phase of light as it passes through biological material. In our recent work, we show how this can be done directly in clinical microscopy by combining chromatic aberrations with #AI
- 🧪
- Reposted by ayakimovich.bsky.social[Not loaded yet]
- I am happy to share that I have been appointed an Associate Professor at the Institute of Computer Science of the Faculty of Computer Science and Mathematics of the University of Wroclaw.
