Inês Cunha
Biomedical Engineer 🤓 Now PhD student at the CMCB Lab, SciLifeLab. Learning how to gain knowledge from images 🦠🔬with AI 💻
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- Reposted by Inês Cunha🦠🔬🤖🧑💻 #mAIcrobe is out! With @pinholab.bsky.social's lab, we launched an open-source framework for high-throughput bacterial image analysis. By rockstars A. Brito & B. Saraiva et al, making #DeepLearning for phenotyping accessible! Easy to use, plus model training 📜 www.biorxiv.org/content/10.1...
- Reposted by Inês Cunha🚀🔬 Announcing #IMS2026 at @itqbnova.bsky.social! We're assembling a #LifeSciences #Microscopy symposium packed with ✨ speakers and 🧑🔬 workshops. All about imaging cells with photons, electrons and AI! If you love microscopy, you need to be here. Join us on March 19! ims2026.itqbnovacommunity.org
- Reposted by Inês CunhaOur new preprint is up! This is the main postdoc work of @wiesner-t.bsky.social focusing on exocytosis along the axon shaft and its regulation by the sub membrane actin-spectrin scaffold: www.biorxiv.org/content/10.1... Read the thread below for a summary of our findings 🧵1/11
- Reposted by Inês CunhaThank you @smlm-symposium.bsky.social for the opportunity to present at #SMLMS2025! 🎉 Stay tuned for the upcoming preprint! 📄
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- Reposted by Inês CunhaAre you looking for a postdoc? I will be looking for 2-4 people after the summer to join the lab !! Do not hesitate to reach out and disseminate !!
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- Our work “AI4CellFate: Interpretable Early Cell Fate Prediction with Generative AI” is finally out in @biorxivpreprint.bsky.social !!! 😍❤️ biorxiv.org/content/10.1... @scilifelab.se , @crick.ac.uk . More about it in the thread #AI4CellFate (1/n)⬇️
- We propose a fully data-driven approach to early cell fate prediction from a microscopy time-lapse. We combine an adversarial autoencoder architecture with a multi-objective loss function, including contrastive learning, to optimise both cell fate prediction and interpretability (2/n)
- We were able to reliably predict cell fate from the very first frame ⚡️of 3 days long acquisition, and identify relevant biological processes🧬 involved in cancer persister cells, despite their known biological variability (3/n)
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View full threadAnd a big thank you to Dr. Alix Le Marois and Dr. Erik Sahai for providing this amazing dataset❤️(see "Imaging of MAP kinase dynamics reveals endocytic regulation of pulsatile signalling and network re-wiring in response to targeted therapy in EGFR-mutant non-small cell lung cancer")
- First research manuscript of my PhD finally submitted!! 🥳❤️ Preprint coming soon... 👀 @juliettegriffie.bsky.social
- Come work with us! 😜 💻🔬
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